ID Name Type Living Source Note
1 ACI/EurMcwi Inbred False MCW
2 ACI/SegHsd Inbred False Envigo
3 BDIX/CrCl Inbred False
4 BN/NHsdMcwi Inbred False MCW
5 BUF/CrCrl Inbred False Charles River
6 COP/CrCrl Inbred False Charles River
7 DA/OlaHsd Inbred False Envigo
8 F344/DuCrl Inbred False Charles River
9 F344/NCrl Inbred False Charles River
10 F344/NHsd Inbred False Envigo
11 FHH/EurMcwi Inbred False
12 GH/OmrMcwi Inbred False
13 HTX/HcjRrrc Inbred False
14 LE/BluGill Inbred False
15 LEW/Crl Inbred False Charles River
16 LEW/SsNHsd Inbred False Envigo
17 LH/MavRrrc Inbred False
18 LN/MavRrrc Inbred False
19 LOU/MNCr Inbred False
20 LUDW/OlaHsd Inbred False Envigo
21 MNS/N Inbred False
22 MWF/Hsd Inbred False Envigo
23 MWF/ZtmRrrc Inbred False
24 PD/Cub Inbred False
25 PVG/Seac Inbred False
26 RCS/LavRrrc Inbred False
27 SHR/NCrl Inbred False Charles River
28 SHRSP/A3NCrl Inbred False Charles River
29 SR/JrHsd Inbred False Envigo
30 SS/JrHsd Inbred False Envigo
31 SS/JrHsdMcwi Inbred False MCW
32 WAG/RijCrl Inbred False Charles River
33 WKY/NCrl Inbred False Charles River
34 WLI/EER Inbred False Eva Redei
35 WMI/EER Inbred False Eva Redei
36 ACI/N Inbred False HS founder
37 BN/SsN Inbred False HS founder
38 BUF/N Inbred False HS founder
39 F344/N Inbred False HS founder
40 M520/N Inbred False HS founder
41 MR/N Inbred False HS founder
42 WKY/N Inbred False HS founder
43 WN/N Inbred False HS founder
44 BN-Lx/Cub Inbred False MCW RI founder
45 SHR/OlaIpcv Inbred False MCW RI founder
46 BXH10 RI False
47 BXH11 RI False
48 BXH12 RI False
49 BXH13 RI False
50 BXH2 RI False
51 BXH3 RI False
52 BXH5 RI False
53 BXH6 RI False
54 BXH8 RI False
55 BXH9 RI False
56 HXB1 RI False
57 HXB10 RI False
58 HXB13 RI False
59 HXB15 RI False
60 HXB17 RI False
61 HXB18 RI False
62 HXB2 RI False
63 HXB20 RI False
64 HXB21 RI False
65 HXB22 RI False
66 HXB23 RI False
67 HXB24 RI False
68 HXB25 RI False
69 HXB27 RI False
70 HXB29 RI False
71 HXB3 RI False
72 HXB31 RI False
73 HXB4 RI False
74 HXB5 RI False
75 HXB7 RI False
76 F344/Stm Inbred False MCW RI founder
77 LE/Stm Inbred False MCW RI founder
78 FXLE12 RI False
79 FXLE13 RI False
80 FXLE14 RI False
81 FXLE15 RI False
82 FXLE16 RI False
83 FXLE17 RI False
84 FXLE18 RI False
85 FXLE19 RI False
86 FXLE20 RI False
87 FXLE21 RI False
88 FXLE22 RI False
89 FXLE23 RI False
90 FXLE24 RI False
91 FXLE25 RI False
92 FXLE26 RI False
93 LEXF10A RI False
94 LEXF10B RI False
95 LEXF10C RI False
96 LEXF11 RI False
97 LEXF1A RI False
98 LEXF1C RI False
99 LEXF2A RI False
100 LEXF2B RI False
101 LEXF2C RI False
102 LEXF3 RI False
103 LEXF4 RI False
104 LEXF5 RI False
105 LEXF6B RI False
106 LEXF7A RI False
107 LEXF7B RI False
108 LEXF7C RI False
109 LEXF8A RI False
110 LEXF8D RI False
111 LEXF9 RI False
Animal_name Strain_name Sex Age Generation Euthanasia_date Source Note
BN-Lx/Cub_Rat1 BN-Lx/Cub M adult 2018-08-01 Pravenec
SHR/OlaIpcv_Rat1 SHR/OlaIpcv M adult 2018-08-01 Pravenec
BXH10_Rat1 BXH10 M adult 2018-08-01 Pravenec
BXH11_Rat1 BXH11 M adult 2018-08-01 Pravenec
BXH12_Rat1 BXH12 M adult 2018-08-01 Pravenec
BXH13_Rat1 BXH13 M adult 2018-08-01 Pravenec
BXH2_Rat1 BXH2 M adult 2018-08-01 Pravenec
BXH3_Rat1 BXH3 M adult 2018-08-01 Pravenec
BXH5_Rat1 BXH5 M adult 2018-08-01 Pravenec
BXH6_Rat1 BXH6 M adult 2018-08-01 Pravenec
BXH8_Rat1 BXH8 M adult 2018-08-01 Pravenec
BXH9_Rat1 BXH9 M adult 2018-08-01 Pravenec
HXB1_Rat1 HXB1 M adult 2018-08-01 Pravenec
HXB10_Rat1 HXB10 M adult 2018-08-01 Pravenec
HXB13_Rat1 HXB13 M adult 2018-08-01 Pravenec
HXB15_Rat1 HXB15 M adult 2018-08-01 Pravenec
HXB17_Rat1 HXB17 M adult 2018-08-01 Pravenec
HXB18_Rat1 HXB18 M adult 2018-08-01 Pravenec
HXB2_Rat1 HXB2 M adult 2018-08-01 Pravenec
HXB20_Rat1 HXB20 M adult 2018-08-01 Pravenec
HXB21_Rat1 HXB21 M adult 2018-08-01 Pravenec
HXB22_Rat1 HXB22 M adult 2018-08-01 Pravenec
HXB23_Rat1 HXB23 M adult 2018-08-01 Pravenec
HXB24_Rat1 HXB24 M adult 2018-08-01 Pravenec
HXB25_Rat1 HXB25 M adult 2018-08-01 Pravenec
HXB27_Rat1 HXB27 M adult 2018-08-01 Pravenec
HXB29_Rat1 HXB29 M adult 2018-08-01 Pravenec
HXB3_Rat1 HXB3 M adult 2018-08-01 Pravenec
HXB31_Rat1 HXB31 M adult 2018-08-01 Pravenec
HXB4_Rat1 HXB4 M adult 2018-08-01 Pravenec
HXB5_Rat1 HXB5 M adult 2018-08-01 Pravenec
HXB7_Rat1 HXB7 M adult 2018-08-01 Pravenec
BN/NHsdMcwi_Eva BN/NHsdMcwi F adult 2004-01-01 Dwinell Eva, euthanized prior to 2004
BN/NHsdMcwi_Rat2 BN/NHsdMcwi M weaning 2018-03-01 Dwinell
BN/NHsdMcwi_Rat3 BN/NHsdMcwi M adult Dwinell
F344/DuCrl_Rat1 F344/DuCrl M adolescent 2018-02-01 Charles River UTHSC order 6493, strain code 002
F344/NCrl_Rat1 F344/NCrl M adolescent 2018-02-01 Charles River UTHSC order 6492
F344/NHsd_Rat1 F344/NHsd M adolescent 2018-02-01 Envigo UTHSC order 6491, foundation stock
LEW/Crl_Rat1 LEW/Crl M adolescent 2018-02-01 Charles River UTHSC order 6490
LEW/SsNHsd_Rat1 LEW/SsNHsd M adolescent 2018-02-01 Envigo UTHSC order 6489, foundation stock
SS/JrHsdMcwi_Rat1 SS/JrHsdMcwi M adult Geurts
SS/JrHsdMcwi_Rat2 SS/JrHsdMcwi M adult Geurts
WLI/Ere_Rat1 WLI/EER M adult Chen
WMI/Ere_Rat1 WMI/EER M adult Chen
FHH/EurMcwi_Rat1 FHH/EurMcwi M adult None None Geurts None
FHH/EurMcwi_Rat2 FHH/EurMcwi M adult None None Geurts None
ACI/N_rat1 ACI/N M adult None None Mandel None
ID Type Animal_ID Transfer_History Note
4512-JFI-0495 lung BN/NHsdMcwi_Eva Dwinell to Chen to HudsonAlpha None
4512-JFI-0496 liver BN/NHsdMcwi_Rat2 Dwinell to Chen to HudsonAlpha None
4512-JFI-0497 spleen F344/NCrl_Rat1 Chen to HudsonAlpha None
4512-JFI-0498 spleen F344/DuCrl_Rat1 Chen to HudsonAlpha None
4512-JFI-0499 spleen F344/NHsd_Rat1 Chen to HudsonAlpha None
4512-JFI-0500 spleen LEW/Crl_Rat1 Chen to HudsonAlpha None
4512-JFI-0501 spleen LEW/SsNHsd_Rat1 Chen to HudsonAlpha None
4512-JFI-0175 liver WLI/Ere_Rat1 Chen to HudsonAlpha None
4512-JFI-0176 liver WMI/Ere_Rat1 Chen to HudsonAlpha None
4512-JFI-0575 spleen SS/JrHsdMcwi_Rat1 Geurts to Chen None
4512-JFI-0576 spleen SS/JrHsdMcwi_Rat2 Geurts to Chen None
4512-JFI-0577 spleen FHH/EurMcwi_Rat1 Geurts to Chen None
4512-JFI-0578 spleen FHH/EurMcwi_Rat2 Geurts to Chen None
4512-JFI-0509 spleen BXH2_Rat1 Pravenec to Chen to HudsonAlpha None
4512-JFI-0510 spleen BXH3_Rat1 Pravenec to Chen to HudsonAlpha None
4512-JFI-0511 spleen BXH5_Rat1 Pravenec to Chen to HudsonAlpha None
4512-JFI-0512 spleen BXH6_Rat1 Pravenec to Chen to HudsonAlpha None
4512-JFI-0513 spleen BXH8_Rat1 Pravenec to Chen to HudsonAlpha None
4512-JFI-0514 spleen BXH9_Rat1 Pravenec to Chen to HudsonAlpha None
4512-JFI-0515 spleen BXH10_Rat1 Pravenec to Chen to HudsonAlpha None
4512-JFI-0516 spleen BXH11_Rat1 Pravenec to Chen to HudsonAlpha None
4512-JFI-0517 spleen BXH12_Rat1 Pravenec to Chen to HudsonAlpha None
4512-JFI-0518 spleen BXH13_Rat1 Pravenec to Chen to HudsonAlpha None
4512-JFI-0519 spleen HXB1_Rat1 Pravenec to Chen to HudsonAlpha None
4512-JFI-0520 spleen HXB2_Rat1 Pravenec to Chen to HudsonAlpha None
4512-JFI-0521 spleen HXB3_Rat1 Pravenec to Chen to HudsonAlpha None
4512-JFI-0522 spleen HXB4_Rat1 Pravenec to Chen to HudsonAlpha None
4512-JFI-0523 spleen HXB5_Rat1 Pravenec to Chen to HudsonAlpha None
4512-JFI-0524 spleen HXB7_Rat1 Pravenec to Chen to HudsonAlpha None
4512-JFI-0525 spleen HXB10_Rat1 Pravenec to Chen to HudsonAlpha None
4512-JFI-0526 spleen HXB13_Rat1 Pravenec to Chen to HudsonAlpha None
4512-JFI-0527 spleen HXB15_Rat1 Pravenec to Chen to HudsonAlpha None
4512-JFI-0528 spleen HXB17_Rat1 Pravenec to Chen to HudsonAlpha None
4512-JFI-0529 spleen HXB18_Rat1 Pravenec to Chen to HudsonAlpha None
4512-JFI-0530 spleen HXB20_Rat1 Pravenec to Chen to HudsonAlpha None
4512-JFI-0531 spleen HXB21_Rat1 Pravenec to Chen to HudsonAlpha None
4512-JFI-0532 spleen HXB22_Rat1 Pravenec to Chen to HudsonAlpha None
4512-JFI-0533 spleen HXB23_Rat1 Pravenec to Chen to HudsonAlpha None
4512-JFI-0534 spleen HXB24_Rat1 Pravenec to Chen to HudsonAlpha None
4512-JFI-0535 spleen HXB25_Rat1 Pravenec to Chen to HudsonAlpha None
4512-JFI-0536 spleen HXB27_Rat1 Pravenec to Chen to HudsonAlpha None
4512-JFI-0537 spleen HXB29_Rat1 Pravenec to Chen to HudsonAlpha None
4512-JFI-0538 spleen HXB31_Rat1 Pravenec to Chen to HudsonAlpha None
4512-JFI-0539 spleen BN-Lx/Cub_Rat1 Pravenec to Chen to HudsonAlpha None
4512-JFI-0540 spleen SHR/OlaIpcv_Rat1 Pravenec to Chen to HudsonAlpha None
95-38313 kidney BN/NHsdMcwi_Rat2 Dwinell to chen to Dalgard None
95-38314 tail ACI/N_rat1 Mandel to Dalgard None
Run_ID DNA_source Platform DNA_extraction_method DNA_concentration DNA_target_length DNA_extraction_facility Library_kit Library_facility Sequencing_instrument Sequencing_date Sequencing_facility Sequencing_notes Raw_data_dir_name Raw_data_format Raw_data_file_size_GB Raw_data_available_from Note
4512-JFI-0502 4512-JFI-0495 10X Chromium HMW 46 HudsonAlpha 150bp_PE HudsonAlpha HiSeq_X10 2018-07-18 HudsonAlpha Lanes per sample: 1 4512-JFI-0502 fastq.gz 66 Chen None
4512-JFI-0503 4512-JFI-0496 10X Chromium HMW 38.6 HudsonAlpha 150bp_PE HudsonAlpha HiSeq_X10 2018-07-18 HudsonAlpha Lanes per sample: 1 4512-JFI-0503 fastq.gz 80 Chen None
4512-JFI-0504 4512-JFI-0497 10X Chromium HMW 42.2 HudsonAlpha 150bp_PE HudsonAlpha HiSeq_X10 2018-07-18 HudsonAlpha Lanes per sample: 1 4512-JFI-0504 fastq.gz 78 Chen None
4512-JFI-0505 4512-JFI-0498 10X Chromium HMW 45.6 HudsonAlpha 150bp_PE HudsonAlpha HiSeq_X10 2018-07-18 HudsonAlpha Lanes per sample: 1 4512-JFI-0505 fastq.gz 79 Chen None
4512-JFI-0506 4512-JFI-0499 10X Chromium HMW 62.8 HudsonAlpha 150bp_PE HudsonAlpha HiSeq_X10 2018-07-18 HudsonAlpha Lanes per sample: 1 4512-JFI-0506 fastq.gz 75 Chen None
4512-JFI-0507 4512-JFI-0500 10X Chromium HMW 43.8 HudsonAlpha 150bp_PE HudsonAlpha HiSeq_X10 2018-07-18 HudsonAlpha Lanes per sample: 1 4512-JFI-0507 fastq.gz 80 Chen None
4512-JFI-0508 4512-JFI-0501 10X Chromium HMW 47 HudsonAlpha 150bp_PE HudsonAlpha HiSeq_X10 2018-07-18 HudsonAlpha Lanes per sample: 1 4512-JFI-0508 fastq.gz 78 Chen None
4512-JFI-0335 4512-JFI-0175 10X Chromium HMW 33.4 HudsonAlpha 150bp_PE HudsonAlpha HiSeq_X10 2017-01-21 HudsonAlpha Lanes per sample: 2 4512-JFI-0509 fastq.gz 62 Chen None
4512-JFI-0336 4512-JFI-0176 10X Chromium HMW 23.8 HudsonAlpha 150bp_PE HudsonAlpha HiSeq_X10 2017-01-21 HudsonAlpha Lanes per sample: 3 4512-JFI-0510 fastq.gz 76 Chen None
4512-JFI-0579 4512-JFI-0575 10X Chromium HMW HudsonAlpha 150bp_PE HudsonAlpha NovaSeq 2018-10-12 HudsonAlpha S4 4512-JFI-0579 fastq.gz 77 Chen None
4512-JFI-0580 4512-JFI-0576 10X Chromium HMW HudsonAlpha 150bp_PE HudsonAlpha NovaSeq 2018-10-12 HudsonAlpha S4 4512-JFI-0580 fastq.gz 73 Chen None
4512-JFI-0581 4512-JFI-0577 10X Chromium HMW HudsonAlpha 150bp_PE HudsonAlpha NovaSeq 2018-10-12 HudsonAlpha S4 4512-JFI-0581 fastq.gz 74 Chen None
4512-JFI-0582 4512-JFI-0578 10X Chromium HMW HudsonAlpha 150bp_PE HudsonAlpha NovaSeq 2018-10-12 HudsonAlpha S4 4512-JFI-0582 fastq.gz 73 Chen None
95-39664 4512-JFI-0509 10X Chromium HMW 35.2 HudsonAlpha 150bp_PE HudsonAlpha HiSeq_X 2019-09-01 USUHS 95-39664 fastq.gz 102 Chen None
95-39665 4512-JFI-0510 10X Chromium HMW 35.6 HudsonAlpha 150bp_PE HudsonAlpha HiSeq_X 2019-09-01 USUHS 95-39665 fastq.gz 85 Chen None
95-39666 4512-JFI-0511 10X Chromium HMW 35 HudsonAlpha 150bp_PE HudsonAlpha HiSeq_X 2019-09-01 USUHS 95-39666 fastq.gz 96 Chen None
95-39667 4512-JFI-0512 10X Chromium HMW 31.6 HudsonAlpha 150bp_PE HudsonAlpha HiSeq_X 2019-09-01 USUHS 95-39667 fastq.gz 89 Chen None
95-39668 4512-JFI-0513 10X Chromium HMW 31 HudsonAlpha 150bp_PE HudsonAlpha HiSeq_X 2019-09-01 USUHS 95-39668 fastq.gz 89 Chen None
95-39669 4512-JFI-0514 10X Chromium HMW 44.8 HudsonAlpha 150bp_PE HudsonAlpha HiSeq_X 2019-09-01 USUHS 95-39669 fastq.gz 77 Chen None
95-39670 4512-JFI-0515 10X Chromium HMW 35 HudsonAlpha 150bp_PE HudsonAlpha HiSeq_X 2019-09-01 USUHS 95-39670 fastq.gz 85 Chen None
95-39671 4512-JFI-0516 10X Chromium HMW 35.6 HudsonAlpha 150bp_PE HudsonAlpha HiSeq_X 2019-09-01 USUHS 95-39671 fastq.gz 94 Chen None
95-39672 4512-JFI-0517 10X Chromium HMW 31.8 HudsonAlpha 150bp_PE HudsonAlpha HiSeq_X 2019-09-01 USUHS 95-39672 fastq.gz 103 Chen None
95-39673 4512-JFI-0518 10X Chromium HMW 24.4 HudsonAlpha 150bp_PE HudsonAlpha HiSeq_X 2019-09-01 USUHS 95-39673 fastq.gz 89 Chen None
95-39674 4512-JFI-0519 10X Chromium HMW 23.8 HudsonAlpha 150bp_PE HudsonAlpha HiSeq_X 2019-09-01 USUHS 95-39674 fastq.gz 110 Chen None
95-39675 4512-JFI-0520 10X Chromium HMW 28.4 HudsonAlpha 150bp_PE HudsonAlpha HiSeq_X 2019-09-01 USUHS 95-39675 fastq.gz 104 Chen None
95-39676 4512-JFI-0521 10X Chromium HMW 32.4 HudsonAlpha 150bp_PE HudsonAlpha HiSeq_X 2019-09-01 USUHS 95-39676 fastq.gz 87 Chen None
95-39677 4512-JFI-0522 10X Chromium HMW 32.6 HudsonAlpha 150bp_PE HudsonAlpha HiSeq_X 2019-09-01 USUHS 95-39677 fastq.gz 142 Chen None
95-39678 4512-JFI-0523 10X Chromium HMW 31.2 HudsonAlpha 150bp_PE HudsonAlpha HiSeq_X 2019-09-01 USUHS 95-39678 fastq.gz 103 Chen None
95-39679 4512-JFI-0524 10X Chromium HMW 28.6 HudsonAlpha 150bp_PE HudsonAlpha HiSeq_X 2019-09-01 USUHS 95-39679 fastq.gz 150 Chen None
95-39680 4512-JFI-0525 10X Chromium HMW 33.2 HudsonAlpha 150bp_PE HudsonAlpha HiSeq_X 2019-09-01 USUHS 95-39680 fastq.gz 92 Chen None
95-39681 4512-JFI-0526 10X Chromium HMW 30 HudsonAlpha 150bp_PE HudsonAlpha HiSeq_X 2019-09-01 USUHS 95-39681 fastq.gz 101 Chen None
95-39682 4512-JFI-0527 10X Chromium HMW 38.2 HudsonAlpha 150bp_PE HudsonAlpha HiSeq_X 2019-09-01 USUHS 95-39682 fastq.gz 87 Chen None
95-39683 4512-JFI-0528 10X Chromium HMW 33.4 HudsonAlpha 150bp_PE HudsonAlpha HiSeq_X 2019-09-01 USUHS 95-39683 fastq.gz 94 Chen None
95-39684 4512-JFI-0529 10X Chromium HMW 28.8 HudsonAlpha 150bp_PE HudsonAlpha HiSeq_X 2019-09-01 USUHS 95-39684 fastq.gz 101 Chen None
95-39685 4512-JFI-0530 10X Chromium HMW 31.6 HudsonAlpha 150bp_PE HudsonAlpha HiSeq_X 2019-09-01 USUHS 95-39685 fastq.gz 91 Chen None
95-39686 4512-JFI-0531 10X Chromium HMW 34.4 HudsonAlpha 150bp_PE HudsonAlpha HiSeq_X 2019-09-01 USUHS 95-39686 fastq.gz 82 Chen None
95-39687 4512-JFI-0532 10X Chromium HMW 37.6 HudsonAlpha 150bp_PE HudsonAlpha HiSeq_X 2019-09-01 USUHS 95-39687 fastq.gz 79 Chen None
95-39688 4512-JFI-0533 10X Chromium HMW 32 HudsonAlpha 150bp_PE HudsonAlpha HiSeq_X 2019-09-01 USUHS 95-39688 fastq.gz 91 Chen None
95-39689 4512-JFI-0534 10X Chromium HMW 29.6 HudsonAlpha 150bp_PE HudsonAlpha HiSeq_X 2019-09-01 USUHS 95-39689 fastq.gz 86 Chen None
95-39690 4512-JFI-0535 10X Chromium HMW 31 HudsonAlpha 150bp_PE HudsonAlpha HiSeq_X 2019-09-01 USUHS 95-39690 fastq.gz 72 Chen None
95-39691 4512-JFI-0536 10X Chromium HMW 37.4 HudsonAlpha 150bp_PE HudsonAlpha HiSeq_X 2019-09-01 USUHS 95-39691 fastq.gz 35 Chen None
95-39692 4512-JFI-0537 10X Chromium HMW 33.2 HudsonAlpha 150bp_PE HudsonAlpha HiSeq_X 2019-09-01 USUHS 95-39692 fastq.gz 93 Chen None
95-39693 4512-JFI-0538 10X Chromium HMW 33.8 HudsonAlpha 150bp_PE HudsonAlpha HiSeq_X 2019-09-01 USUHS 95-39693 fastq.gz 79 Chen None
95-39694 4512-JFI-0539 10X Chromium HMW 31.8 HudsonAlpha 150bp_PE HudsonAlpha HiSeq_X 2019-09-01 USUHS 95-39694 fastq.gz 83 Chen None
95-39695 4512-JFI-0540 10X Chromium HMW 33.2 HudsonAlpha 150bp_PE HudsonAlpha HiSeq_X 2019-09-01 USUHS 95-39695 fastq.gz 83 Chen None
95-39696 95-38313 10X Chromium HMW USUHS 150bp_PE USUHS HiSeq_X 2019-09-01 USUHS 95-39696 fastq.gz 60 Chen None
95-39697 95-38314 10X Chromium HMW USUHS 150bp_PE USUHS HiSeq_X 2019-09-01 USUHS 95-39697 fastq.gz 58 Chen None
95-35734 4512-JFI-0495 10X Chromium HMW 46 HudsonAlpha 150bp_PE HudsonAlpha HiSeq_X 2019-07-26 USUHS 95-35734 fastq.gz 73 Chen None
95-38313 95-38313 Illumina HMW USUHS 150bp_PE USUHS HiSeq_X 2019-07-26 USUHS 95-38313 fastq.gz 82 Chen None
95-38314 95-38314 Illumina HMW USUHS 150bp_PE USUHS HiSeq_X 2019-07-26 USUHS 95-38314 fastq.gz 80 Chen None
Analysis_ID Sequencing_ID Software_name Software_version Results_dir Analysis_date Note
4512-JFI-0335.LR1 4512-JFI-0335 LongRanger 2.2.2 longranger_results/0335_wli 2019-01-04
4512-JFI-0336.LR1 4512-JFI-0336 LongRanger 2.2.2 longranger_results/0336_wmi 2019-01-03
4512-JFI-0502.LR1 4512-JFI-0502 LongRanger 2.2.2 longranger_results/0502_bn_eve 2018-07-29
4512-JFI-0503.LR1 4512-JFI-0503 LongRanger 2.2.2 longranger_results/0503_bn_male 2018-08-01
4512-JFI-0504.LR1 4512-JFI-0504 LongRanger 2.2.2 longranger_results/0504_f344ncrl 2018-08-09
4512-JFI-0505.LR1 4512-JFI-0505 LongRanger 2.2.2 longranger_results/0505_f344ducr 2018-08-08
4512-JFI-0506.LR1 4512-JFI-0506 LongRanger 2.2.2 longranger_results/0506_f344nhsd 2018-08-07
4512-JFI-0507.LR1 4512-JFI-0507 LongRanger 2.2.2 longranger_results/0507_lewcrl 2018-08-09
4512-JFI-0508.LR1 4512-JFI-0508 LongRanger 2.2.2 longranger_results/0508_lewssnhsd 2018-08-08
95-39664.LR1 95-39664 LongRanger 2.2.2 longranger_results/BXH2 2019-10-03
95-39665.LR1 95-39665 LongRanger 2.2.2 longranger_results/BXH3 2019-10-02
95-39666.LR1 95-39666 LongRanger 2.2.2 longranger_results/BXH5 2019-10-01
95-39667.LR1 95-39667 LongRanger 2.2.2 longranger_results/BXH6 2019-09-26
95-39668.LR1 95-39668 LongRanger 2.2.2 longranger_results/BXH8 2019-09-30
95-39669.LR1 95-39669 LongRanger 2.2.2 longranger_results/BXH9 2019-10-02
95-39670.LR1 95-39670 LongRanger 2.2.2 longranger_results/BXH10 2019-09-30
95-39671.LR1 95-39671 LongRanger 2.2.2 longranger_results/BXH11 2019-10-02
95-39672.LR1 95-39672 LongRanger 2.2.2 longranger_results/BXH12 2019-10-14
95-39673.LR1 95-39673 LongRanger 2.2.2 longranger_results/BXH13 2019-10-01
95-39674.LR1 95-39674 LongRanger 2.2.2 longranger_results/HXB1 2019-10-02
95-39675.LR1 95-39675 LongRanger 2.2.2 longranger_results/HXB2 2019-10-12
95-39676.LR1 95-39676 LongRanger 2.2.2 longranger_results/HXB3 2019-10-08
95-39677.LR1 95-39677 LongRanger 2.2.2 longranger_results/HXB4 2019-10-22
95-39678.LR1 95-39678 LongRanger 2.2.2 longranger_results/HXB5 2019-10-20
95-39679.LR1 95-39679 LongRanger 2.2.2 longranger_results/HXB7 2019-10-13
95-39680.LR1 95-39680 LongRanger 2.2.2 longranger_results/HXB10 2019-10-23
95-39681.LR1 95-39681 LongRanger 2.2.2 longranger_results/HXB13 2019-10-26
95-39682.LR1 95-39682 LongRanger 2.2.2 longranger_results/HXB15 2019-10-23
95-39683.LR1 95-39683 LongRanger 2.2.2 longranger_results/HXB17 2019-10-01
95-39684.LR1 95-39684 LongRanger 2.2.2 longranger_results/HXB18 2019-10-01
95-39685.LR1 95-39685 LongRanger 2.2.2 longranger_results/HXB20 2019-10-03
95-39686.LR1 95-39686 LongRanger 2.2.2 longranger_results/HXB21 2019-10-08
95-39687.LR1 95-39687 LongRanger 2.2.2 longranger_results/HXB22 2019-10-06
95-39688.LR1 95-39688 LongRanger 2.2.2 longranger_results/HXB23 2019-10-08
95-39689.LR1 95-39689 LongRanger 2.2.2 longranger_results/HXB24 2019-10-07
95-39690.LR1 95-39690 LongRanger 2.2.2 longranger_results/HXB25 2019-10-11
95-39691.LR1 95-39691 LongRanger 2.2.2 longranger_results/HXB27 2019-10-06
95-39692.LR1 95-39692 LongRanger 2.2.2 longranger_results/HXB29 2019-10-11
95-39693.LR1 95-39693 LongRanger 2.2.2 longranger_results/HXB31 2019-10-10
95-39694.LR1 95-39694 LongRanger 2.2.2 longranger_results/BN-Lx_Cub 2019-10-02
95-39695.LR1 95-39695 LongRanger 2.2.2 longranger_results/SHR_OlaIpcv 2019-10-16
4512-JFI-0579.LR1 4512-JFI-0579 LongRanger 2.2.2 longranger_results/0579_dss 2019-03-29
4512-JFI-0580.LR1 4512-JFI-0580 LongRanger 2.2.2 longranger_results/0580_dss 2019-04-23
4512-JFI-0581.LR1 4512-JFI-0581 LongRanger 2.2.2 longranger_results/0581_fhh 2019-04-02
4512-JFI-0582.LR1 4512-JFI-0582 LongRanger 2.2.2 longranger_results/0582_fhh 2019-03-29
95-35734.LR1 95-35734 LongRanger 2.2.2 longranger_results/0502_bn_eve_clif 2019-06-10
95-39696.LR1 95-39696 LongRanger 2.2.2 longranger_results/BN_male 2019-10-03
95-39697.LR1 95-39697 LongRanger 2.2.2 longranger_results/ACI-N 2019-10-08
95-39670.SN1 95-39670 Supernova 2.1.1 supernova_results/BXH10 2020-01-24
95-39671.SN1 95-39671 Supernova 2.1.1 supernova_results/BXH11 2020-02-09
95-39672.SN1 95-39672 Supernova 2.1.1 supernova_results/BXH12 2020-02-19
95-39673.SN1 95-39673 Supernova 2.1.1 supernova_results/BXH13 2020-02-23
95-39664.SN1 95-39664 Supernova 2.1.1 supernova_results/BXH2 2020-02-24
95-39665.SN1 95-39665 Supernova 2.1.1 supernova_results/BXH3 2020-02-25
95-39666.SN1 95-39666 Supernova 2.1.1 supernova_results/BXH5 2020-02-26
95-39667.SN1 95-39667 Supernova 2.1.1 supernova_results/BXH6 2020-02-29
95-39668.SN1 95-39668 Supernova 2.1.1 supernova_results/BXH8 2020-03-03
95-39669.SN1 95-39669 Supernova 2.1.1 supernova_results/BXH9 2020-01-31
4512-JFI-0579.SN1 4512-JFI-0579 Supernova 2.1.1 supernova_results/dss_denovo_multi 2019-04-24 combined analysis of 4512-JFI-0579 and 4512-JFI-0580
4512-JFI-0580.SN1 4512-JFI-0580 Supernova 2.1.2 supernova_results/dss_denovo_multi 2019-04-25 combined analysis of 4512-JFI-0579 and 4512-JFI-0580
4512-JFI-0581.SN1 4512-JFI-0581 Supernova 2.1.3 supernova_results/fhh_denovo_multi 2019-04-26 combined analysis of 4512-JFI-0581 and 4512-JFI-0582
4512-JFI-0582.SN2 4512-JFI-0582 Supernova 2.1.1 supernova_results/fhh_denovo_multi 2019-04-27 combined analysis of 4512-JFI-0581 and 4512-JFI-0582
95-39680.SN1 95-39680 Supernova 2.1.1 supernova_results/HXB10 2020-01-21
95-39681.SN1 95-39681 Supernova 2.1.1 supernova_results/HXB13 2020-01-30
95-39682.SN1 95-39682 Supernova 2.1.1 supernova_results/HXB15 2020-01-27
95-39683.SN1 95-39683 Supernova 2.1.1 supernova_results/HXB17 2020-01-26
95-39684.SN1 95-39684 Supernova 2.1.1 supernova_results/HXB18 2020-02-05
95-39674.SN1 95-39674 Supernova 2.1.1 supernova_results/HXB1 2020-02-02
95-39685.SN1 95-39685 Supernova 2.1.1 supernova_results/HXB20 2020-01-28
95-39686.SN1 95-39686 Supernova 2.1.1 supernova_results/HXB21 2020-01-30
95-39687.SN1 95-39687 Supernova 2.1.1 supernova_results/HXB22 2020-01-22
95-39688.SN1 95-39688 Supernova 2.1.1 supernova_results/HXB23 2020-01-26
95-39689.SN1 95-39689 Supernova 2.1.1 supernova_results/HXB24 2020-01-26
95-39690.SN1 95-39690 Supernova 2.1.1 supernova_results/HXB25 2020-01-26
95-39693.SN1 95-39693 Supernova 2.1.1 supernova_results/HXB31 2020-01-30
95-39676.SN1 95-39676 Supernova 2.1.1 supernova_results/HXB3 2020-02-13
95-39675.SN1 95-39675 Supernova 2.1.1 supernova_results/HXB2 2020-01-30
95-39677.SN1 95-39677 Supernova 2.1.1 supernova_results/HXB4 2020-02-15
95-39678.SN1 95-39678 Supernova 2.1.1 supernova_results/HXB5 2020-01-30
95-39679.SN1 95-39679 Supernova 2.1.1 supernova_results/HXB7 2020-02-14
95-39691.SN1 95-39691 Supernova 2.1.1 supernova_results/HXB27 2020-01-22
95-39692.SN1 95-39692 Supernova 2.1.1 supernova_results/HXB29 2020-01-31
95-39694.SN1 95-39694 Supernova 2.1.1 supernova_results/BN-Lx_Cub 2019-11-01
95-39695.SN1 95-39695 Supernova 2.1.1 supernova_results/SHR_OlaIpcv 2019-11-01
95-39696.GH1 95-39696 GROC-SVs Udit_PR3 grocsvs_HXB 2020-03-02 combined analysis of BN samples and HXB
95-39697.GH1 95-39697 GROC-SVs Udit_PR3 grocsvs_HXB 2020-03-02 combined analysis of BN samples and HXB
95-35734.GH1 95-35734 GROC-SVs Udit_PR3 grocsvs_HXB 2020-03-02 combined analysis of BN samples and HXB
4512-JFI-0502.GH1 4512-JFI-0502 GROC-SVs Udit_PR3 grocsvs_HXB 2020-03-02 combined analysis of BN samples and HXB
4512-JFI-0503.GH1 4512-JFI-0503 GROC-SVs Udit_PR3 grocsvs_HXB 2020-03-02 combined analysis of BN samples and HXB
95-39664.GH1 95-39664 GROC-SVs Udit_PR3 grocsvs_HXB 2020-03-02 combined analysis of BN samples and HXB
95-39665.GH1 95-39665 GROC-SVs Udit_PR3 grocsvs_HXB 2020-03-02 combined analysis of BN samples and HXB
95-39666.GH1 95-39666 GROC-SVs Udit_PR3 grocsvs_HXB 2020-03-02 combined analysis of BN samples and HXB
95-39667.GH1 95-39667 GROC-SVs Udit_PR3 grocsvs_HXB 2020-03-02 combined analysis of BN samples and HXB
95-39668.GH1 95-39668 GROC-SVs Udit_PR3 grocsvs_HXB 2020-03-02 combined analysis of BN samples and HXB
95-39669.GH1 95-39669 GROC-SVs Udit_PR3 grocsvs_HXB 2020-03-02 combined analysis of BN samples and HXB
95-39670.GH1 95-39670 GROC-SVs Udit_PR3 grocsvs_HXB 2020-03-02 combined analysis of BN samples and HXB
95-39671.GH1 95-39671 GROC-SVs Udit_PR3 grocsvs_HXB 2020-03-02 combined analysis of BN samples and HXB
95-39672.GH1 95-39672 GROC-SVs Udit_PR3 grocsvs_HXB 2020-03-02 combined analysis of BN samples and HXB
95-39673.GH1 95-39673 GROC-SVs Udit_PR3 grocsvs_HXB 2020-03-02 combined analysis of BN samples and HXB
95-39674.GH1 95-39674 GROC-SVs Udit_PR3 grocsvs_HXB 2020-03-02 combined analysis of BN samples and HXB
95-39675.GH1 95-39675 GROC-SVs Udit_PR3 grocsvs_HXB 2020-03-02 combined analysis of BN samples and HXB
95-39676.GH1 95-39676 GROC-SVs Udit_PR3 grocsvs_HXB 2020-03-02 combined analysis of BN samples and HXB
95-39677.GH1 95-39677 GROC-SVs Udit_PR3 grocsvs_HXB 2020-03-02 combined analysis of BN samples and HXB
95-39678.GH1 95-39678 GROC-SVs Udit_PR3 grocsvs_HXB 2020-03-02 combined analysis of BN samples and HXB
95-39679.GH1 95-39679 GROC-SVs Udit_PR3 grocsvs_HXB 2020-03-02 combined analysis of BN samples and HXB
95-39680.GH1 95-39680 GROC-SVs Udit_PR3 grocsvs_HXB 2020-03-02 combined analysis of BN samples and HXB
95-39681.GH1 95-39681 GROC-SVs Udit_PR3 grocsvs_HXB 2020-03-02 combined analysis of BN samples and HXB
95-39682.GH1 95-39682 GROC-SVs Udit_PR3 grocsvs_HXB 2020-03-02 combined analysis of BN samples and HXB
95-39683.GH1 95-39683 GROC-SVs Udit_PR3 grocsvs_HXB 2020-03-02 combined analysis of BN samples and HXB
95-39684.GH1 95-39684 GROC-SVs Udit_PR3 grocsvs_HXB 2020-03-02 combined analysis of BN samples and HXB
95-39685.GH1 95-39685 GROC-SVs Udit_PR3 grocsvs_HXB 2020-03-02 combined analysis of BN samples and HXB
95-39686.GH1 95-39686 GROC-SVs Udit_PR3 grocsvs_HXB 2020-03-02 combined analysis of BN samples and HXB
95-39687.GH1 95-39687 GROC-SVs Udit_PR3 grocsvs_HXB 2020-03-02 combined analysis of BN samples and HXB
95-39688.GH1 95-39688 GROC-SVs Udit_PR3 grocsvs_HXB 2020-03-02 combined analysis of BN samples and HXB
95-39689.GH1 95-39689 GROC-SVs Udit_PR3 grocsvs_HXB 2020-03-02 combined analysis of BN samples and HXB
95-39690.GH1 95-39690 GROC-SVs Udit_PR3 grocsvs_HXB 2020-03-02 combined analysis of BN samples and HXB
95-39691.GH1 95-39691 GROC-SVs Udit_PR3 grocsvs_HXB 2020-03-02 combined analysis of BN samples and HXB
95-39692.GH1 95-39692 GROC-SVs Udit_PR3 grocsvs_HXB 2020-03-02 combined analysis of BN samples and HXB
95-39693.GH1 95-39693 GROC-SVs Udit_PR3 grocsvs_HXB 2020-03-02 combined analysis of BN samples and HXB
95-39694.GH1 95-39694 GROC-SVs Udit_PR3 grocsvs_HXB 2020-03-02 combined analysis of BN samples and HXB
95-39695.GH1 95-39695 GROC-SVs Udit_PR3 grocsvs_HXB 2020-03-02 combined analysis of BN samples and HXB
4512-JFI-0335.DV1 4512-JFI-0335 DeepVariant 0.9.0-gpu /data/10_TB/deepvar 2019-12-04
4512-JFI-0336.DV1 4512-JFI-0336 DeepVariant 0.9.0-gpu /data/10_TB/deepvar 2019-12-04
4512-JFI-0502.DV1 4512-JFI-0502 DeepVariant 0.9.0-gpu /data/10_TB/deepvar 2019-12-04
4512-JFI-0503.DV1 4512-JFI-0503 DeepVariant 0.9.0-gpu /data/10_TB/deepvar 2019-12-04
4512-JFI-0504.DV1 4512-JFI-0504 DeepVariant 0.9.0-gpu /data/10_TB/deepvar 2019-12-04
4512-JFI-0505.DV1 4512-JFI-0505 DeepVariant 0.9.0-gpu /data/10_TB/deepvar 2019-12-04
4512-JFI-0506.DV1 4512-JFI-0506 DeepVariant 0.9.0-gpu /data/10_TB/deepvar 2019-12-04
4512-JFI-0507.DV1 4512-JFI-0507 DeepVariant 0.9.0-gpu /data/10_TB/deepvar 2019-12-04
4512-JFI-0508.DV1 4512-JFI-0508 DeepVariant 0.9.0-gpu /data/10_TB/deepvar 2019-12-04
95-39664.DV1 95-39664 DeepVariant 0.9.0-gpu /data/10_TB/deepvar 2019-12-04
95-39665.DV1 95-39665 DeepVariant 0.9.0-gpu /data/10_TB/deepvar 2019-12-04
95-39666.DV1 95-39666 DeepVariant 0.9.0-gpu /data/10_TB/deepvar 2019-12-04
95-39667.DV1 95-39667 DeepVariant 0.9.0-gpu /data/10_TB/deepvar 2019-12-04
95-39668.DV1 95-39668 DeepVariant 0.9.0-gpu /data/10_TB/deepvar 2019-12-04
95-39669.DV1 95-39669 DeepVariant 0.9.0-gpu /data/10_TB/deepvar 2019-12-04
95-39670.DV1 95-39670 DeepVariant 0.9.0-gpu /data/10_TB/deepvar 2019-12-04
95-39671.DV1 95-39671 DeepVariant 0.9.0-gpu /data/10_TB/deepvar 2019-12-04
95-39672.DV1 95-39672 DeepVariant 0.9.0-gpu /data/10_TB/deepvar 2019-12-04
95-39673.DV1 95-39673 DeepVariant 0.9.0-gpu /data/10_TB/deepvar 2019-12-04
95-39674.DV1 95-39674 DeepVariant 0.9.0-gpu /data/10_TB/deepvar 2019-12-04
95-39675.DV1 95-39675 DeepVariant 0.9.0-gpu /data/10_TB/deepvar 2019-12-04
95-39676.DV1 95-39676 DeepVariant 0.9.0-gpu /data/10_TB/deepvar 2019-12-04
95-39677.DV1 95-39677 DeepVariant 0.9.0-gpu /data/10_TB/deepvar 2019-12-04
95-39678.DV1 95-39678 DeepVariant 0.9.0-gpu /data/10_TB/deepvar 2019-12-04
95-39679.DV1 95-39679 DeepVariant 0.9.0-gpu /data/10_TB/deepvar 2019-12-04
95-39680.DV1 95-39680 DeepVariant 0.9.0-gpu /data/10_TB/deepvar 2019-12-04
95-39681.DV1 95-39681 DeepVariant 0.9.0-gpu /data/10_TB/deepvar 2019-12-04
95-39682.DV1 95-39682 DeepVariant 0.9.0-gpu /data/10_TB/deepvar 2019-12-04
95-39683.DV1 95-39683 DeepVariant 0.9.0-gpu /data/10_TB/deepvar 2019-12-04
95-39684.DV1 95-39684 DeepVariant 0.9.0-gpu /data/10_TB/deepvar 2019-12-04
95-39685.DV1 95-39685 DeepVariant 0.9.0-gpu /data/10_TB/deepvar 2019-12-04
95-39686.DV1 95-39686 DeepVariant 0.9.0-gpu /data/10_TB/deepvar 2019-12-04
95-39687.DV1 95-39687 DeepVariant 0.9.0-gpu /data/10_TB/deepvar 2019-12-04
95-39688.DV1 95-39688 DeepVariant 0.9.0-gpu /data/10_TB/deepvar 2019-12-04
95-39689.DV1 95-39689 DeepVariant 0.9.0-gpu /data/10_TB/deepvar 2019-12-04
95-39690.DV1 95-39690 DeepVariant 0.9.0-gpu /data/10_TB/deepvar 2019-12-04
95-39691.DV1 95-39691 DeepVariant 0.9.0-gpu /data/10_TB/deepvar 2019-12-04
95-39692.DV1 95-39692 DeepVariant 0.9.0-gpu /data/10_TB/deepvar 2019-12-04
95-39693.DV1 95-39693 DeepVariant 0.9.0-gpu /data/10_TB/deepvar 2019-12-04
95-39694.DV1 95-39694 DeepVariant 0.9.0-gpu /data/10_TB/deepvar 2019-12-04
95-39695.DV1 95-39695 DeepVariant 0.9.0-gpu /data/10_TB/deepvar 2019-12-04
4512-JFI-0579.DV1 4512-JFI-0579 DeepVariant 0.9.0-gpu /data/10_TB/deepvar 2019-12-04
4512-JFI-0580.DV1 4512-JFI-0580 DeepVariant 0.9.0-gpu /data/10_TB/deepvar 2019-12-04
4512-JFI-0581.DV1 4512-JFI-0581 DeepVariant 0.9.0-gpu /data/10_TB/deepvar 2019-12-04
4512-JFI-0582.DV1 4512-JFI-0582 DeepVariant 0.9.0-gpu /data/10_TB/deepvar 2019-12-04
95-35734.DV1 95-35734 DeepVariant 0.9.0-gpu /data/10_TB/deepvar 2019-12-04
95-39696.DV1 95-39696 DeepVariant 0.9.0-gpu /data/10_TB/deepvar 2019-12-04
95-39697.DV1 95-39697 DeepVariant 0.9.0-gpu /data/10_TB/deepvar 2019-12-04